White Matter Segmentation Education (WiMSE)

White Matter Segmentation Education (WiMSE)

Front matter

Author and Funding information
White Matter Segmentation Education - WiMSE
Building bridges from the familiar to the unfamiliar

Building intuitions with digital images

Introduction to discretized image representation and maps
Aligning two images
Multi object maps in images
A consideration of jpegs and brain images

Working with NIfTI data

How to represent the brain’s anatomy - as a volume
How to interpret a volumetric brain segmentation

White matter and tractography

The voxel and the streamline
The source tractogram

Segmenting tractography

A first segmentation
Biological Plausibility for Tractograms
ROIs as tools
Using ROIs as tools
A second segmentation - categorical segmentation
Advanced anatomically-based segmentation
Example Segmentation: uncinate fasciculus
Example Segmentation: inferior fronto-occipital fasciculus (IFOF)

Epilogue

Closing Thoughts

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Index

By Daniel Bullock
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