Industry_research

Daniel N. Bullock

iisdanbul@gmail.com; DanNBullock.github.io

Manassas, VA, USA

Education

Ph.D., Psychology, Neuroscience
at Indiana University Bloomington (Bloomington, IN),
Department of Psychological and Brain Sciences, Program in Neuroscience
6 / 2015 to 6 / 2021
B.S., Biology
at North Carolina State University (Raleigh, NC),
Department of Biological Sciences

Minor(s): Math, Genetics
8 / 2005 to 5 / 2006, &
8 / 2012 to 5 / 2015
Graduate Program, Philosophy
at University of Cincinnati (Cincinnati, OH),
Department of Philosophy
8 / 2009 to 5 / 2011
B.A., Psychology, Philosophy
at University of North Carolina at Chapel Hill (Chapel Hill, NC),
Department of Psychology and Neuroscience

Minor(s): Cognitive Science
8 / 2006 to 5 / 2009

Experience

Science and Engineering Technical Advisor (SETA) [Contractor]
at The Advanced Research Projects Agency for Health (ARPA-H) (Washington, D.C.),
Health Science Futures (HSF)

Supervised by Ileana Hancu()
Domain: Technology Development and Transfer
Type: Project Management, Research
Dates: 7 / 2024
Workload: 40 hrs per week
Primary Science & Engineering Technical Advisor (SETA) overseeing a portfolio of ARPA-H (80M lifetime budget). Provide technical guidance to performer teams and ARPA-H staff, engage internal and external stakeholders, review incoming proposals, and track milestone progress. Scope and design new ARPA-H programs — developed the initial structure and vision for the Systematic Targeting Of MicroPlastics (STOMP) program and served as primary architect of the major technical requirements (TA-2) for the Imaging Data Exchange (INDEX) program.
Technical skills: Advanced LLM Workflows, Ontology Formation, LLM Operating Frameworks, Dataset Quality Assessment, Data Science, Data Visualization, Figure Generation, Platform Design
Non-technical skills: Problem Scoping, Project Management, Documentation, Literature Review, Budget Oversight, Program Management, Proposal Review, Report Development
Science and Technology Policy Fellow
at National Science Foundation (Alexandria, VA),
Computer and Information Science and Engineering, Office of Advanced Cyberinfrastructure

Supervised by Alejandro Suarez() , Robert Beverly()
Domain: Science and Cyberinfrastructure
Type: Research, Policy
Dates: 8 / 2022 to 7 / 2024
Workload: 40 hrs per week
AAAS Science & Technology Policy Fellow in NSF's Office of Advanced Cyberinfrastructure (OAC), supporting open-science and cyberinfrastructure policy. Contributed to the Pathways to Open Source Ecosystems (POSE) program (panels, program-description revision, triage) and to NSF Public Access efforts; member of the NSF team coordinating the multi-agency National AI Research Resource (NAIRR) Pilot, developing data-related practices and policies. For the OSTP Subcommittee on Open Science's Open Science Infrastructure (OSI) Working Group, analyzed openly available federal-agency data and authored the findings in a report on agency investments in open-science infrastructure.
Technical skills: Advanced LLM Workflows, Ontology Formation, Python, Linux, Git, XML, JSON, Big Data, Data Scraping, Dataset Quality Assessment, Data Science, Data Visualization, Figure Generation, Jupyter Notebooks, Open-Source Software
Non-technical skills: Problem Scoping, Project Management, Documentation, Science Communication, Grant Management, Program Management, Grant Review, Literature Review, Science Policy, Data Policy, Policy Drafting, Report Development, Interagency Working Groups
Postdoctoral Researcher
at University of Minnesota (Minneapolis, MN),
Medical School, Department of Neuroscience

Supervised by Sarah Heilbronner() , Jan Zimmermann()
Domain: Computational Neuroanatomy
Type: Research
Dates: 7 / 2021 to 7 / 2022
Workload: 40+ hrs per week
Postdoctoral researcher in computational neuroanatomy developing automated segmentation methods for the brain's major white-matter tracts from tractography, using cross-species and literature-based anatomy. Visualized tractography and segmentation results, quantified tract properties, and developed, documented, and maintained code repositories for replicability. Resulting tools enabled cross-referencing of non-humanprimate 'ground-truth' connectivity against imaging-based human connectivity, and served as anatomy models supporting development of deep brain stimulation (DBS) techniques and technologies.
Technical skills: Python, Linux, Git, Docker, Neuroimaging, Neuroanatomy, Neuroscience, Brain Imaging Data Structure (BIDS), Neuroimaging Data Processing, Medical Image Processing, Bash and Shell Scripting, Big Data, Dataset Quality Assessment, Data Science, Jupyter Notebooks, Containerization, Open-Source Development, Open-Source Software, High Performance Computing (HPC), Data Visualization, Testing and Debugging, Coordinated/Collaborative Testing and Debugging, Statistical Analysis, Advanced Statistical Analysis
Non-technical skills: Problem Scoping, Project Management, Documentation, Science Communication, Manuscript Production, Manuscript Editing, Mentorship
Application developer and maintainer
at Indiana University Bloomington (Bloomington, IN),
Department of Psychological and Brain Sciences, Program in Neuroscience

Supervised by Franco Pestilli() , Soichi Hayashi()
Domain: Platform Development
Type: Development
Dates: 7 / 2017 to 7 / 2023
Workload: ~ 5 - 10 hrs per week
Application developer for the brainlife.io platform, producing and maintaining containerized brain-data processing applications that drastically simplified use of advanced processing and analysis techniques. Contributed testing, monitoring, and feedback on service deployment and coordination; created novel data-processing and visualization code and adapted existing resources. Led scoping, creation, and maintenance of specific data formats/standards.
Technical skills: Python, Matlab, JSON, Markdown, Linux, Git, Neuroimaging Software Packages, Brain Imaging Data Structure (BIDS), Neuroimaging, Neuroimaging Data Structures, Neuroimaging Data Processing, 3-D Image Processing, Bash and Shell Scripting, Big Data, Dataset Quality Assessment, Data Science, Docker, Containerization, High Performance Computing (HPC), Continuous Integration and Continuous Delivery/Deployment (CI/CD), Testing and Debugging, Collaborative Development, Data Visualization, Advanced Statistical Analysis
Non-technical skills: Problem Scoping, Project Management, Task Specialization, Multi-endeavor Balancing and Prioritization, Documentation, Stakeholder Engagement, Rapid Iteration Production, Long-Term Product/Project Maintenance, Soliciting and Incorporating Client Feedback, Progress Reporting
Graduate Student/Researcher
at Indiana University Bloomington (Bloomington, IN),
Department of Psychological and Brain Sciences, Program in Neuroscience

Supervised by Franco Pestilli()
Domain: Computational Neuroanatomy
Type: Research
Dates: 6 / 2015 to 6 / 2021
Workload: 40+ hrs per week
Graduate researcher in computational neuroanatomy developing and implementing automated segmentation methods for major white-matter tracts from tractography, enabling personalized models of brain anatomy and connectivity. Visualized segmentation results and quantified tract properties. Developed tractography quality-assurance methods.
Technical skills: Python, Matlab, Linux, Git, Neuroimaging, Neuroanatomy, Neuroscience, Brain Imaging Data Structure (BIDS), Neuroimaging Data Structures, Neuroimaging Data Processing, Medical Image Processing, Bash and Shell Scripting, Big Data, Dataset Quality Assessment, Data Science, Jupyter Notebooks, High Performance Computing (HPC), Data Visualization, Statistical Analysis, Advanced Statistical Analysis
Non-technical skills: Problem Scoping, Project Management, Multi-endeavor Balancing and Prioritization, Project Schedule Development and Coordination, Documentation, Science Communication, Manuscript Production, Manuscript Editing, Public Speaking, Presentation Development and Delivery, Research Methods, Research Design, Mentorship
Graduate Student Researcher Representative
at Indiana University Bloomington (Bloomington, IN),
Bloomington Faculty Council (BFC)

Domain: Academic Governance
Type: Leadership/Service, Policy
Dates: 8 / 2017 to 5 / 2021
Workload: ~ 1 hrs per week
Voting member of the Bloomington Faculty Council (BFC), representing graduate student researchers on all matters before the council, including campus-level policy, resolutions, and development planning. Engaged campus and university administrators on specific issues and standing ad hoc committees.
Non-technical skills: Advocacy, Constituency Engagement, Constituency Representation, Rapport Building, Institutional Advocacy, Institutional Engagement, University Policy, University Development Strategy, Public Speaking
Member, Research Affairs Committee (RAC)
at Indiana University Bloomington (Bloomington, IN),
Bloomington Faculty Council (BFC)

Domain: Academic Governance
Type: Leadership/Service, Policy
Dates: 8 / 2017 to 5 / 2021
Workload: ~ 1 hrs per week
Member of the BFC Research Affairs Committee, representing graduate student researchers on campus research-affairs issues — including COVID impacts, conflict-of-interest management, research disclosures, openaccess policy, and non-tenure-track researchers. Worked with the Office of Research Administration, the Office of the Vice Provost for Research, and other campus stakeholders.
Non-technical skills: Constituency Representation, Rapport Building, Institutional Advocacy, Institutional Engagement, Research Policy, Research Ethics, Research Staffing, Conflict of Interest Management, Institutional Research Policy, Open Access Policy
Member, Technology Policy Committee
at Indiana University Bloomington (Bloomington, IN),
Bloomington Faculty Council (BFC)

Domain: Academic Governance
Type: Leadership/Service, Policy
Dates: 8 / 2020 to 5 / 2021
Workload: ~ 1 hrs per week
Member of the BFC Technology Policy Committee, representing graduate student researchers on technology-implementation issues — including virtual conferencing, email and data platforms, and research-data storage and ownership.
Non-technical skills: Advocacy, Technology Policy Development, Research Data Policy, Institutional Engagement
Graduate Teaching Assistant
at Indiana University Bloomington (Bloomington, IN),
Department of Psychological and Brain Sciences

Domain: Psychology
Type: Teaching
Dates: 8 / 2017 to 5 / 2018, &
8 / 2020 to 5 / 2021
Workload: ~ 15 - 20 hrs per week
Graduate teaching assistant across four semesters for courses in research methods and statistics, cognitive neuroscience, and social neuroscience. Led discussion sections, held office hours, and supported grading and classroom management.
Non-technical skills: Performance Assessment, Classroom Management, Discussion Section Coordination, Individualized Instruction, Feedback Provision
Chair, Benefits committee
at Indiana University Bloomington (Bloomington, IN),
Indiana University Graduate and Professional Student Government

Domain: Academic Governance
Type: Leadership/Service, Policy
Dates: 8 / 2020 to 5 / 2021
Workload: ~ 1 - 2 hrs per week
Chair of the Benefits Committee in the IU Graduate & Professional Student Government (GPSG) and member of the GPSG executive committee, advocating for graduate and professional students on compensation, benefits, and professional issues. Managed a team of graduate student representatives and engaged university administrators — including the Dean of the University Graduate School — on policy development and specific concerns.
Non-technical skills: Leadership, Committee Management, Advocacy, Team Management, Human Resources and Benefits Policy, Stakeholder Engagement, Institutional Engagement
Summer Research Fellow
at University of Virginia (Charlottesville, VA),
Biocomplexity Institute, Data Science For Public Good

Supervised by Gizem Korkmaz() , Brandon Kramer() , Joel Thurston()
Domain: Data Science
Type: Development, Research
Dates: 6 / 2020 to 8 / 2020
Workload: 40 hrs per week
Summer Research Fellow in the Data Science for the Public Good (DSPG) program, serving as participant lead on two projects: ontology/taxonomy development for Army personnel performance assessments, and systematic valuation of open-source development processes. Produced code and qualitative/quantitative analyses, performed data curation and dataset linking, built visualizations, and managed interns. Presented insights to multiple audiences and led delivery under rapid-production timelines.
Technical skills: Software Development, Web Development, Data Science, Data Curation, Dataset Quality Assessment, Data Visualization, Python, Git, SQL
Non-technical skills: Presentation Development and Delivery, Project Management, Team Management, Mentorship, Report Development, Stakeholder Engagement, Problem Scoping
Neuroscience Representative
at Indiana University Bloomington (Bloomington, IN),
Graduate and Professional Student Government

Domain: Academic Governance
Type: Leadership/Service, Policy
Dates: 8 / 2017 to 5 / 2020
Workload: ~ 2 - 3 hrs per week
Elected representative for the Program in Neuroscience to the IU Graduate & Professional Student Government, helping shape and develop resolutions as an active member of the organization.
Non-technical skills: Representation, Resolution Development, Public Speaking, Robert's Rules of Order

Publications

TitleDateVenueLinkCitation
A Reproducible Pipeline for Parcellation of the Anterior Limb of the Internal Capsule12-01
2024
Biological Psychiatry: Cognitive Neuroscience and NeuroimagingSretavan, K., Braun, H., Liu, Z., Bullock, D., Palnitkar, T., Patriat, R., Chandrasekaran, J., Brenny, S., Johnson, M. D., Widge, A. S., Harel, N., & Heilbronner, S. R. (2024). A Reproducible Pipeline for Parcellation of the Anterior Limb of the Internal Capsule. Biological Psychiatry: Cognitive Neuroscience and Neuroimaging, 9(12), 1249-1261. https://doi.org/10.1016/j.bpsc.2024.07.008
brainlife.io: A decentralized and open source cloud platform to support neuroscience research06-03
2023
arXivHayashi, S., Caron, B. A., Heinsfeld, A. S., Vinci-Booher, S., McPherson, B., Bullock, D. N., ... & Pestilli, F. (2023). brainlife. io: A decentralized and open source cloud platform to support neuroscience research. ArXiv.Current Research in Neurobiology, revision under review, https://doi.org/10.48550/arXiv.2306.02183
The use of chemogenetic actuator ligands in nonhuman primate DREADDs-fMRI12-30
2022
Current Research in NeurobiologyAdriana K. Cushnie, Daniel N. Bullock, Ana M. G. Manea, Wei Tang, Jan Zimmermann, Sarah R.Heilbronner, The use of chemogenetic actuator ligands in nonhuman primate DREADDs-fMRI, Current Research in Neurobiology, in press, https://doi.org/10.1016/j.crneur.2022.100072
Development of white matter tracts between and within the dorsal and ventral streams03-10
2022
Brain Structure and FunctionVinci-Booher, S., Caron, B., Bullock, D., James, K., & Pestilli, F. (2022). Development of white matter tracts between and within the dorsal and ventral streams. Brain Structure and Function, 227(4), 1457-1477.
A taxonomy of the brain’s white matter: twenty-one major tracts for the 21st century02-15
2022
Cerebral CortexDaniel N Bullock, Elena A Hayday, Mark D Grier, Wei Tang, Franco Pestilli, Sarah R Heilbronner, A taxonomy of the brain’s white matter: twenty-one major tracts for the 21st century, Cerebral Cortex, Volume 32, Issue 20, 15 October 2022, Pages 4524–4548, https://doi.org/10.1093/cercor/bhab500
Visual information routes in the posterior dorsal and ventral face network studied with intracranial neurophysiology and white matter tract endpoints01-15
2022
Cerebral CortexBabo-Rebelo, M., Puce, A., Bullock, D., Hugueville, L., Pestilli, F., Adam, C., ... & George, N. (2022). Visual information routes in the posterior dorsal and ventral face network studied with intracranial neurophysiology and white matter tract endpoints. Cerebral Cortex, 32(2), 342-366.
Tractography dissection variability: What happens when 42 groups dissect 14 white matter bundles on the same dataset?10-22
2021
NeuroImageSchilling, K. G., Rheault, F., Petit, L., Hansen, C. B., Nath, V., Yeh, F. C., ... & Descoteaux, M. (2021). Tractography dissection variability: What happens when 42 groups dissect 14 white matter bundles on the same dataset?. NeuroImage, 243, 118502.
A model of the development of major white matter pathways within and between ventral and dorsal visual streams09-27
2021
Journal of VisionVinci-Booher, S., Caron, B., Bullock, D., James, K., & Pestilli, F. (2021). A model of the development of major white matter pathways within and between ventral and dorsal visual streams. Journal of Vision, 21(9), 2698-2698.
Computational Segmentation of White Matter Anatomy: Methods, Insights, and Standards06-01
2021
Indiana University ProQuest Dissertations PublishingBullock, D. (2021). Computational Segmentation of White Matter Anatomy: Methods, Insights, and Standards.
Collegiate athlete brain data for white matter mapping and network neuroscience02-11
2021
Scientific DataCaron, B., Stuck, R., McPherson, B. et al. Collegiate athlete brain data for white matter mapping and network neuroscience. Sci Data 8, 56 (2021). https://doi.org/10.1038/s41597-021-00823-z
The human endogenous attentional control network includes a ventro-temporal cortical node01-15
2021
Nature CommunicationsSani, I., Stemmann, H., Caron, B., Bullock, D., Stemmler, T., Fahle, M., ... & Freiwald, W. A. (2021). The human endogenous attentional control network includes a ventro-temporal cortical node. Nature communications, 12(1), 1-16.
Classifyber, a robust streamline-based linear classifier for white matter bundle segmentation01-01
2021
NeuroImageBertò, G., Bullock, D., Astolfi, P., Hayashi, S., Zigiotto, L., Annicchiarico, L., ... & Olivetti, E. (2021). Classifyber, a robust streamline-based linear classifier for white matter bundle segmentation. NeuroImage, 224, 117402.
Bundle analytics, a computational framework for investigating the shapes and profiles of brain pathways across populations10-13
2020
Scientific reportsChandio, B. Q., Risacher, S. L., Pestilli, F., Bullock, D., Yeh, F. C., Koudoro, S., ... & Garyfallidis, E. (2020). Bundle analytics, a computational framework for investigating the shapes and profiles of brain pathways across populations. Scientific reports, 10(1), 1-18.
Advanced mapping of the human white matter microstructure better separates elite sports participation08-25
2020
PsyArXivCaron, B., Bullock, D., Kitchell, L., McPherson, B. C., Kellar, D. A., Cheng, H., ... & Pestilli, F. (2020). Advanced mapping of the human white matter microstructure better separates elite sports participation. PsyArXiv.
Associative white matter connecting the dorsal and ventral posterior human cortex07-24
2019
Brain Structure and FunctionBullock, D., Takemura, H., Caiafa, C.F. et al. Associative white matter connecting the dorsal and ventral posterior human cortex. Brain Struct Funct 224, 2631–2660 (2019). https://doi.org/10.1007/s00429-019-01907-8
The open diffusion data derivatives, brain data upcycling via integrated publishing of derivatives and reproducible open cloud services05-23
2019
Scientific dataAvesani, P., McPherson, B., Hayashi, S., Caiafa, C. F., Henschel, R., Garyfallidis, E., ... & Pestilli, F. (2019). The open diffusion data derivatives, brain data upcycling via integrated publishing of derivatives and reproducible open cloud services. Scientific data, 6(1), 1-13.
Anatomically-Informed Multiple Linear Assignment Problems for White Matter Bundle Segmentation04-08
2019
2019 IEEE 16th International Symposium on Biomedical ImagingBertò, G., Avesani, P., Pestilli, F., Bullock, D., Caron, B., & Olivetti, E. (2019, April). Anatomically-Informed Multiple Linear Assignment Problems for White Matter Bundle Segmentation. In 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019) (pp. 135-138). IEEE.
Shape analysis of white matter tracts via the Laplace-Beltrami spectrum09-20
2018
International Workshop on Shape in Medical ImagingKitchell, L., Bullock, D., Hayashi, S., & Pestilli, F. (2018, September). Shape analysis of white matter tracts via the Laplace-Beltrami spectrum. In International Workshop on Shape in Medical Imaging (pp. 195-206). Springer, Cham.
Oryza sativa (japonica cultivar-group) clone dan18 putative D-type cyclin gene, partial cds.06-18
2004
NIH NCBI GenBankN/A