Qualifying Exams Paper Compilation
A collection of three papers that I wrote in the summer of 2018 for my PhD program’s qualifying examinations
Portfolio
Here you'll find a selection of projects or products that I've worked on over the years. Click on an entry to find a short description of the product and a link to the relevant GitHub repository or interface. 
White Matter Anatomy Database (WMAD)
An interactive database and framework for cataloging accounts of white matter tracts and their anatomy throughout the literature.
Interactive White Matter Segmentation
A user-friendly, binder-enabled jupyter notebook for performing anatomy-based segmentations.
White Matter Segmentation Education (WiMSE)
A website/collection of jupyter notebooks designed to provide a comprehensive exploration of concepts related to white matter segmentation.
OCT & MAIA Scripts
A collection of code and scripts for processing, analyzing and visualizing data from Optical Coherence Tomography (OCT) and Macular Integrity Assessment (MAIA), at both the individual and group levels.
CiteAs on requirements.txt
GitHub action for using the CiteAs API to generate a software citation ACKNOWLEDGEMENTS.md document automatically from a requirements.txt file.
White Matter Anatomy Tools (wmaTools)
Matlab-based toolkit for the segmentation and analysis of streamline tractography.
White Matter Anatomy Python Tools (wma_pyTools)
Pythonic refactoring of wma_Tools toolkit for the segmentation and analysis of streamline tractography.
Track the Anterior Limb of the Internal Capsule
A dockerized, brainlife.io application to track the anterior limb of the internal capsule using ensemble tractography.
White Matter Anatomy Segmentation (wmaSeg)
Brainlife.io application for classifying streamlines into known anatomical tracts.